smart-on-fhir

smart-on-fhir/cumulus-etl

Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

25 stars 9 forks 25 watchers Python Apache License 2.0

bdf-toolbox bioinformatics fhir nlp

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2 Open Issues Need Help Last updated: Jul 17, 2026

Open Issues Need Help

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Ugly traceback error if auth error happens during `init` 14 days ago

enhancement good first issue

smart-on-fhir/cumulus-etl

25

Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

Python

#bdf-toolbox#bioinformatics#fhir#nlp

Upload Notes: Should be able to upload up until a cap is hit 21 days ago

good first issue

smart-on-fhir/cumulus-etl

25

Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

Python

#bdf-toolbox#bioinformatics#fhir#nlp