scverse/scanpy

Minimum cell cutoff in sc.pl.dotplot 10 days ago

good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

sc.pl.paga: TypeError: paga() got an unexpected keyword argument 'ncols' 16 days ago

Area - Plotting 🌺 good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

ValueError: cannot convert float NaN to integer about 1 month ago

good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

Refactor `BasePlot` not to create a dataframe representation of the data about 2 months ago

Area - Plotting 🌺 Area – Performance 🐌 good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

Inline example plots in docs 5 months ago

Area - Documentation 📒 Area - Plotting 🌺 good first issue Meta

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

_sparse_nanmean is inefficient 8 months ago

Area – Performance 🐌 good first issue

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

Compute UMAP from pre-existing distance matrix 11 months ago

good first issue Area - Topology 🍩

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

Output numer of observations aggregated from `scanpy.get.aggregate` 11 months ago

Area – Differential Expression good first issue Area – API

scverse/scanpy

2.5K

Single-cell analysis in Python. Scales to >100M cells.

Python

#anndata#bioinformatics#data-science#machine-learning#python#scanpy#scverse#transcriptomics#visualize-data

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