nf-core/viralrecon - 4 Help Wanted Issues

Open Issues Need Help

Addition of a parameter for the minimum depth to call a base 17 days ago

enhancement good first issue

165

Assembly and intrahost/low-frequency variant calling for viral samples

Nextflow

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Homogenize nanopore normalized variant filenames about 2 months ago

enhancement good first issue

nf-core/viralrecon

165

Assembly and intrahost/low-frequency variant calling for viral samples

Nextflow

#amplicon#artic#assembly#covid-19#covid19#illumina#long-read-sequencing#metagenomics#nanopore#nextflow#nf-core#ont#oxford-nanopore#pipeline#sars-cov-2#variant-calling#viral#virus#workflow

Min Quality differes between iVar and mpileup 2 months ago

bug good first issue

nf-core/viralrecon

165

Assembly and intrahost/low-frequency variant calling for viral samples

Nextflow

#amplicon#artic#assembly#covid-19#covid19#illumina#long-read-sequencing#metagenomics#nanopore#nextflow#nf-core#ont#oxford-nanopore#pipeline#sars-cov-2#variant-calling#viral#virus#workflow

Review params and config naming 5 months ago

documentation enhancement good first issue

nf-core/viralrecon

165

Assembly and intrahost/low-frequency variant calling for viral samples

Nextflow

#amplicon#artic#assembly#covid-19#covid19#illumina#long-read-sequencing#metagenomics#nanopore#nextflow#nf-core#ont#oxford-nanopore#pipeline#sars-cov-2#variant-calling#viral#virus#workflow