nf-core

nf-core/genomeassembler

Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

34 stars 22 forks 34 watchers Nextflow MIT License
genome-assembly nextflow nf-core pipeline workflow
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3 Open Issues Need Help Last updated: Sep 16, 2026

Open Issues Need Help

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Clean up reporting module 7 days ago
help wanted
nf-core/genomeassembler
34

Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

Nextflow
#genome-assembly#nextflow#nf-core#pipeline#workflow
add `SyRi` for QC 7 days ago
enhancement help wanted
nf-core/genomeassembler
34

Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

Nextflow
#genome-assembly#nextflow#nf-core#pipeline#workflow
`quickmerge` as an alternative or replacement for `ragtag/patch` 7 days ago
enhancement help wanted
nf-core/genomeassembler
34

Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

Nextflow
#genome-assembly#nextflow#nf-core#pipeline#workflow