draeger-lab

draeger-lab/SPECIMEN

Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

5 stars 2 forks 5 watchers Jupyter Notebook GNU General Public License v3.0

3 Open Issues Need Help Last updated: Jul 22, 2025

Open Issues Need Help

View All on GitHub

Release 1.0.0 Tracker 27 days ago

help wanted release

draeger-lab/SPECIMEN

5

Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

Jupyter Notebook

Improve pyproject.toml & add docker 28 days ago

help wanted

draeger-lab/SPECIMEN

5

Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

Jupyter Notebook

QoL for developement of config YAMLs 4 months ago

help wanted config

draeger-lab/SPECIMEN

5

Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

Jupyter Notebook