Noble-Lab/casanovo

allow val_check_interval to be a float about 1 month ago

good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

"Configured residue(s) not in model alphabet" warning fires spuriously during training from scratch 5 months ago

bug good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Casanovo does not check for repeated m/z values in spectra 5 months ago

enhancement good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

shuffle_buffer_size buffers batches, not samples 6 months ago

good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Warning about mismatched residue alphabet 6 months ago

bug good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Allow user to control frequency of reporting training loss 7 months ago

good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Track scan numbers in MGF files 7 months ago

enhancement good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Add training set size to log file 7 months ago

good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Unneeded check for directory 8 months ago

bug good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Warn for annotated spectra with unknown sequence formatting 10 months ago

bug good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Add peptide db output 10 months ago

enhancement good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

min_peptide_length 11 months ago

bug good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Remove reverse_peptide flag 12 months ago

good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Peptide length in the log summary is not the same as in the input 12 months ago

bug good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

Casanovo always logs `Mismatching tokenizer parameter in model checkpoint vs config file` warning 12 months ago

good first issue

Noble-Lab/casanovo

195

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Python

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