GuyTeichman/RNAlysis

Consistency: reparent-before-deleteLater in remaining widget-teardown sites 1 day ago

good first issue

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Packaging: setup.py Python classifiers incomplete (missing 3.10 and 3.14) 3 days ago

good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: docstrings still describe pandas return types after the 4.0 Polars migration 4 days ago

documentation help wanted

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: user_guide.rst content inconsistencies and typos 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: broken code examples in user_guide.rst (wrong method names, doubled paths, bare class names) 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: broken image/figure references in the user guides (6 refs) 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: copyright year in conf.py is 2024 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: FAQ typos and list-numbering glitches 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: glossary has broken :term: cross-references and typos 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: FAQ's `parallel=False` advice no longer applies to clustering/enrichment 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: installation guide gives Qt5 plugin instructions, but app is Qt6 since 4.1.0 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: user guides still describe enrichment output as a pandas DataFrame 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: 'install from sources' commands in installation.rst are invalid 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: FAQ lists wrong supported Python versions (3.7–3.10, recommends 3.8) 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Docs: broken import examples in user_guide.rst (`from *RNAlysis* import ...`) 4 days ago

documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Bug: set_biotype_ref_table_path prompt says 'Attribute' instead of 'Biotype' 4 days ago

bug good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Typos in user-facing strings and README citation 5 days ago

bug documentation good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

Bug: DEFAULT_ORGANISMS misspells 'Arabodopsis thaliana' 5 days ago

bug good first issue

GuyTeichman/RNAlysis

140

Analyze your RNA sequencing data without writing a single line of code

Python

#bioinformatics#bioinformatics-analysis#bioinformatics-pipeline#bioinformatics-tool#gui-application#rna-seq#rna-seq-analysis#rna-seq-pipeline#rnaseq#smallrna#smallrna-seq#transcriptomics

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