Biohub

Biohub/iohub

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

56 stars 14 forks 56 watchers Python BSD 3-Clause "New" or "Revised" License
bioimaging image-metadata ndimensional-arrays ome-zarr ome-zarr-converter python
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4 Open Issues Need Help Last updated: Nov 2, 2026

Open Issues Need Help

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Universal entry points 1 day ago
help wanted area: readers design discussion
Biohub/iohub
56

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

Python
#bioimaging#image-metadata#ndimensional-arrays#ome-zarr#ome-zarr-converter#python
Add code coverage check on PRs 1 day ago
good first issue ci
Biohub/iohub
56

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

Python
#bioimaging#image-metadata#ndimensional-arrays#ome-zarr#ome-zarr-converter#python
Contrast limit should follow the datatype of the dataset 1 day ago
good first issue area: ngff
Biohub/iohub
56

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

Python
#bioimaging#image-metadata#ndimensional-arrays#ome-zarr#ome-zarr-converter#python
Nice to have: `__repr__` functions for ngff nodes 1 day ago
good first issue area: ngff
Biohub/iohub
56

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

Python
#bioimaging#image-metadata#ndimensional-arrays#ome-zarr#ome-zarr-converter#python