BMGLab/PeakATail - 5 Help Wanted Issues

Open Issues Need Help

add pair wise comparison between inputetd cell groups about 1 month ago

enhancement help wanted

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

migrate to h5ad format about 1 month ago

enhancement help wanted

BMGLab/PeakATail

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

get readlenand cb from bam about 1 month ago

enhancement good first issue

BMGLab/PeakATail

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

Add PAS identifier to the ENSG ids in the `pas_gene.tsv` about 1 month ago

enhancement good first issue

BMGLab/PeakATail

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell

please rename the output file names about 1 month ago

enhancement good first issue

BMGLab/PeakATail

Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.

Python

#apa#bioinformatics#computational-biology#genomics#peak-calling#polyadenylation#python#rna-seq#scrna-seq#single-cell